This page will be used to track the different projects that need to be moved from the Oracle Exadata environment to another environment.
Database Schema List
The list of affected projects are below:
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Exadata Schema Name | Project Name | Process Type | Process Name | Process Location | Owner | Notes |
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ACT_I2B2_DATA | ACT | N/A | N/A | N/A | Daniel Popham | Decommissioned project as of May 2023. However, there is data in the following schemas that should be archived somewhere before Exadata is decommissioned |
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ACT_I2B2_ |
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HIVE | ACT | N/A | N/A | N/A | Daniel Popham |
ACT_I2B2_IMDATA | ACT | N/A | N/A | N/A | Daniel Popham |
ACT_I2B2_METADATA | ACT | N/A | N/A | N/A | Daniel Popham |
ACT_I2B2_PM | ACT | N/A | N/A | N/A | Daniel Popham |
ACT_I2B2_SHRINE_ONT | ACT | N/A | N/A | N/A | Daniel Popham |
ACT_I2B2_WORKDATA |
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ACT | N/A | N/A | N/A | Daniel Popham | ||
ACT_TEST_DATA | ACT | N/A | N/A | N/A | Daniel Popham | Decommissioned project as of May 2023. All of these schemas can be removed. |
ACT_TEST_HIVE | ACT | N/A | N/A | N/A | Daniel Popham | |
ACT_TEST_IMDATA | ACT | N/A | N/A | N/A | Daniel Popham | |
ACT_TEST_METADATA | ACT | N/A | N/A | N/A | Daniel Popham | |
ACT_TEST_PM | ACT | N/A | N/A | N/A | Daniel Popham | |
ACT_TEST_SHRINE_ONT | ACT | N/A | N/A | N/A | Daniel Popham | |
ACT_TEST_WORKDATA | ACT | N/A | N/A | N/A | Daniel Popham | |
CODI | CODI | Airflow DAG | DEV: plt-nosql01.dhe.duke.edu PRD: plp-nosql01.dhe.duke.edu | Daniel Popham | Contains data used for the CODI project, supported by the PCORNet CDM data. Project has been decommissioned and the associated DAG has been disabled. |
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HSC_I2B2_DATA | Carolinas Collaborative (CC) | N/A | N/A | N/A | Daniel Popham | Decommissioned project some time before 2020. However, required to keep data until end of year 2025 for archival/historical purposes. Data in the following schemas should be archived somewhere before Exadata is decommissioned |
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HSC_I2B2_ |
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HIVE | Carolinas Collaborative (CC) | N/A | N/A | N/A | Daniel Popham |
HSC_I2B2_IMDATA | Carolinas Collaborative (CC) | N/A | N/A | N/A | Daniel Popham |
HSC_I2B2_METADATA | Carolinas Collaborative (CC) | N/A | N/A | N/A | Daniel Popham |
HSC_I2B2_PM | Carolinas Collaborative (CC) | N/A | N/A | N/A | Daniel Popham |
HSC_I2B2_SHRINE_ONT | Carolinas Collaborative (CC) | N/A | N/A | N/A | Daniel Popham |
HSC_I2B2_WORKDATA | Carolinas Collaborative (CC) | N/A | N/A | N/A | Daniel Popham |
HSC_PCOR | N3C | Airflow DAG |
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- HSC_PCOR
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- RXNORM
- RXNORM_2017 - Actually used for N3C project. These tables should be moved somewhere else that makes more sense.
Airflow Process List
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N3C Only: vwp-pmndmc.dhe.duke.edu | Daniel Popham | Project that runs monthly to generate data for N3C project from monthly refresh. | |
PCORNet/STAR |
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Daniel Popham | Project that contains the PCORNet CDM data that is refreshed both quarterly and monthly. | |
RECOVER |
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To Be Moved (Data Engineering)
The following section will be moved to the Data Engineering wiki page for tracking migration projects there.
- COVID19 and COVID19_TEST - Schemas used for tracking COVID19 data and testing. Includes COVID19 Dashboard, DISCERN alerts, and REDCap Extract processes.
- DISCERN - Real time alert system. Tables include data archived for alerts for debugging/tracking purposes along with some input tables for a handful of DISCERN alerts.
- REDCAP_SEA - Schema used with the REDCap Extract program to store data for specific REDCap surveys along with settings table for the process.
List of DAGs
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Daniel Popham | Project that runs quarterly to generate data for RECOVER project based on available PCORNet refresh data . | |||||
Bayer | Python Script | BayerExtract.py | Daniel Popham | Data extract from external database into HSC_PCOR schema. Script is located on shared drive, \\duhs-clin-nc1\duhs_pmn_dmc_fs\Bayer\. Mapped to H: on vwp-pmndmc.dhe.duke.edu. | ||
RXNORM | PCORNet/STAR | Unix Shell Script | RxNormLoad.sh | Daniel Popham | Process related to the PCORNet/STAR project that refreshes RxNorm data on a quarterly basis, before the STAR quarterly refresh. Manually run. | |
RXNORM_2017 | PCORNet/STAR | Windows Batch File | N3C_Main.bat | vwp-pmndmc.dhe.duke.edu | Daniel Popham | Actually used for N3C project. These tables should be moved somewhere else that makes more sense. |